Search Results

• DASHMM Accelerated Adaptive Fast Multipole Poisson-Boltzmann Solver on Distributed Memory Architecture

  Bo Zhang, Jackson DeBuhr, Drake Niedzielski, Silvio Mayolo, Benzhuo Lu, Thomas Sterling

  2018-12-08

  48656 3351 Pages:1235-1258

• The Role of Anionic Protein Residues on the Salt Dependence of the Binding of Aminoacyl-tRNA Synthetases to tRNA: A Poisson-Boltzmann Analysis

  Johan H. Bredenberg, Alexander H. Boschitsch, Marcia O. Fenley

  2008-03-01

  40027 4135 Pages:1051-1070

• Modeling Salt Dependence of Protein-Protein Association: Linear vs Non-Linear Poisson-Boltzmann Equation

  Kemper Talley, Petras Kundrotas, Emil Alexov

  2008-03-01

  40645 4403 Pages:1071-1086

• On Applicability of Poisson-Boltzmann Equation for Micro- and Nanoscale Electroosmotic Flows

  Moran Wang, Shiyi Chen

  2008-03-01

  40167 4214 Pages:1087-1099

• Adaptive Finite Element Modeling Techniques for the Poisson-Boltzmann Equation

  M. Holst, J. A. McCammon, Z. Yu, Y. C. Zhou, Y. Zhu

  2012-11-01

  40218 4422 Pages:179-214

• Mathematical and Numerical Aspects of the Adaptive Fast Multipole Poisson-Boltzmann Solver

  Bo Zhang, Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, Nikos P. Pitsianis, Xiaobai Sun, J. Andrew McCammon

  2013-01-05

  41133 4482 Pages:107-128

• An Adaptive, Finite Difference Solver for the Nonlinear Poisson-Boltzmann Equation with Applications to Biomolecular Computations

  Mohammad Mirzadeh, Maxime Theillard, Asdis Helgadottir, David Boy, Frederic Gibou

  2013-01-05

  40917 4595 Pages:150-173

• Error Estimates for the Iterative Discontinuous Galerkin Method to the Nonlinear Poisson-Boltzmann Equation

  Peimeng Yin, Yunqing Huang, Hailiang Liu

  2018-07-03

  46424 5087 Pages:168-197

• Accurate p$K_a$ Computation Using Matched Interface and Boundary (MIB) Method Based Poisson-Boltzmann Solver

  Jingzhen Hu, Shan Zhao, Weihua Geng

  2018-08-21

  47425 3289 Pages:520-539

• Discontinuous Bubble Immersed Finite Element Method for Poisson-Boltzmann Equation

  In Kwon, Do Y. Kwak

  2018-11-09

  48270 3473 Pages:928-946

• Multi-Scale Deep Neural Network (MscaleDNN) for Solving Poisson-Boltzmann Equation in Complex Domains

  Ziqi Liu, Wei Cai, Zhi-Qin John Xu

  2020-11-18

  74175 3751 Pages:1970-2001

• Recent Progress in Numerical Methods for the Poisson-Boltzmann Equation in Biophysical Applications

  B. Z. Lu, Y. C. Zhou, M. J. Holst, J. A. McCammon

  2008-03-01

  45354 5479 Pages:973-1009 Open-access

• The Geometry Behind Numerical Solvers of the Poisson-Boltzmann Equation

  Xinwei Shi, Patrice Koehl

  2008-03-01

  40434 4208 Pages:1032-1050

• An Iterative Discontinuous Galerkin Method for Solving the Nonlinear Poisson Boltzmann Equation

  Peimeng Yin, Yunqing Huang, Hailiang Liu

  2014-08-03

  42393 4165 Pages:491-515

• Poisson-Boltzmann Solvents in Molecular Dynamics Simulations

  Jun Wang, Chunhu Tan, Yu-Hong Tan, Qiang Lu, Ray Luo

  2008-03-01

  40016 4162 Pages:1010-1031

• Lattice Poisson-Boltzmann Simulations of Electroosmotic Flows in Charged Anisotropic Porous Media

  Moran Wang, Ning Pan, Jinku Wang, Shiyi Chen

  2007-02-01

  38614 4206 Pages:1055-1070

• Numerical Optimization of a Walk-on-Spheres Solver for the Linear Poisson-Boltzmann Equation

  Travis Mackoy, Robert C. Harris, Jesse Johnson, Michael Mascagni, Marcia O. Fenley

  2013-01-05

  41143 4424 Pages:195-206

• Poisson-Boltzmann Theory of Bionanosystems

  A. Sayyed-Ahmad, Y. Miao, P. Ortoleva

  2008-03-01

  39603 4293 Pages:1100-1116

• Between Algorithm and Model: Different Molecular Surface Definitions for the Poisson-Boltzmann Based Electrostatic Characterization of Biomolecules in Solution

  Sergio Decherchi, Jose Colmenares, Chiara Eva Catalano, Michela Spagnuolo, Emil Alexov, Walter Rocchia

  2013-01-05

  40907 4540 Pages:61-89

• Poisson-Boltzmann Calculations: Van Der Waals or Molecular Surface?

  Xiaodong Pang, Huan-Xiang Zhou

  2013-01-05

  41283 4494 Pages:1-12

• Some Random Batch Particle Methods for the Poisson-Nernst-Planck and Poisson-Boltzmann Equations

  Lei Li, Jian-Guo Liu, Yijia Tang

  2022-07-06

  43771 3747 Pages:41-82

• Image Charge Methods for a Three-Dielectric-Layer Hybrid Solvation Model of Biomolecules

  Peihua Qin, Zhenli Xu, Wei Cai, Donald Jacobs

  2020-07-30

  39135 3926 Pages:955-977

• Free Energy Calculations for DNA Near Surfaces Using an Ellipsoidal Geometry

  J. Ambia-Garrido, B. Montgomery Pettitt

  2008-03-01

  39993 4138 Pages:1117-1131

• Modeling the Influence of Salt on the Hydrophobic Effect and Protein Fold Stability

  Mihir S. Date, Brian N. Dominy

  2013-01-05

  42672 6187 Pages:90-106

• DelEnsembleElec: Computing Ensemble-Averaged Electrostatics Using DelPhi

  Lane W. Votapka, Luke Czapla, Maxim Zhenirovskyy, Rommie E. Amaro

  2013-01-05

  41120 4502 Pages:256-268

• Salt Dependent Association of Novel Mutants of TATA-Binding Proteins to DNA: Predictions from Theory and Experiments

  Johan H. Bredenberg, Marcia O. Fenley

  2008-03-01

  39367 4061 Pages:1132-1153

• Understanding Depletion Induced Like-Charge Attraction from Self-Consistent Field Model

  Pei Liu, Manman Ma, Zhenli Xu

  2019-10-31

  42691 4208 Pages:95-111