Novel 2D Graphic Representation of Protein Sequence and Its Application

Novel 2D Graphic Representation of Protein Sequence and Its Application

Year:    2014

Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 1 : pp. 23–33

Abstract

In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.

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Journal Article Details

Publisher Name:    Global Science Press

Language:    English

DOI:    https://doi.org/10.3993/jfbi03201403

Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 1 : pp. 23–33

Published online:    2014-01

AMS Subject Headings:   

Copyright:    COPYRIGHT: © Global Science Press

Pages:    11

Keywords:    Graphic Representation

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