Similarity Analysis of Protein Sequences Based on the EMD Method
Year: 2014
Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 3 : pp. 387–395
Abstract
An Empirical Mode Decomposition (EMD) method to analyze the similarities of protein sequences is proposed. The EMD method was used to divide a signal sequence converted from a protein sequence into a group of well-behaved Intrinsic Mode Functions (IMFs) and a residue which is monotonic or a trend. This is so that the similarities can be compared among protein sequences by the corresponding residues conveniently and intuitively. This work verifies the method's suitability by using the cytochrome c protein sequences of seven different species.
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Journal Article Details
Publisher Name: Global Science Press
Language: English
DOI: https://doi.org/10.3993/jfbi09201408
Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 3 : pp. 387–395
Published online: 2014-01
AMS Subject Headings:
Copyright: COPYRIGHT: © Global Science Press
Pages: 9
Keywords: MQ-RBF Quasi-interpolant
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