Similarity Analysis of Protein Sequences Based on the EMD Method

Similarity Analysis of Protein Sequences Based on the EMD Method

Year:    2014

Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 3 : pp. 387–395

Abstract

An Empirical Mode Decomposition (EMD) method to analyze the similarities of protein sequences is proposed. The EMD method was used to divide a signal sequence converted from a protein sequence into a group of well-behaved Intrinsic Mode Functions (IMFs) and a residue which is monotonic or a trend. This is so that the similarities can be compared among protein sequences by the corresponding residues conveniently and intuitively. This work verifies the method's suitability by using the cytochrome c protein sequences of seven different species.

You do not have full access to this article.

Already a Subscriber? Sign in as an individual or via your institution

Journal Article Details

Publisher Name:    Global Science Press

Language:    English

DOI:    https://doi.org/10.3993/jfbi09201408

Journal of Fiber Bioengineering and Informatics, Vol. 7 (2014), Iss. 3 : pp. 387–395

Published online:    2014-01

AMS Subject Headings:   

Copyright:    COPYRIGHT: © Global Science Press

Pages:    9

Keywords:    MQ-RBF Quasi-interpolant

  1. Similarities in Southern African Development Community (SADC) Exchange Rate Markets Structure: Evidence from the Ensemble Empirical Mode Decomposition

    Adam, Anokye M.

    Kyei, Kwabena

    Moyo, Simiso

    Gill, Ryan

    Gyamfi, Emmanuel N.

    Journal of African Business, Vol. 23 (2022), Iss. 2 P.516

    https://doi.org/10.1080/15228916.2021.1874795 [Citations: 12]